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Updating MD5s to reflect new FT fixed count of 1 not UNBOUNDED

This commit is contained in:
Mark DePristo 2012-06-28 16:40:16 -04:00
parent 6bea28ae6f
commit 86feea917e
2 changed files with 3 additions and 6 deletions
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6
public/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargetsIntegrationTest.java
View File

@ -38,17 +38,17 @@ public class DiagnoseTargetsIntegrationTest extends WalkerTest {
private void DTTest(String testName, String args, String md5) {
String base = String.format("-T DiagnoseTargets --no_cmdline_in_header -R %s -L %s", REF, L) + " -o %s ";
WalkerTestSpec spec = new WalkerTestSpec(base + args, Arrays.asList(md5));
spec.disableShadowBCF();
//spec.disableShadowBCF();
executeTest(testName, spec);
}
@Test(enabled = true)
public void testSingleSample() {
DTTest("testSingleSample ", "-I " + singleSample + " -max 75", "ef71a569a48697c89e642cdda7bfb766");
DTTest("testSingleSample ", "-I " + singleSample + " -max 75", "a10a0a20c6402207a2d968113595fde8");
}
@Test(enabled = true)
public void testMultiSample() {
DTTest("testMultiSample ", "-I " + multiSample, "1e6e15156e01e736274898fdac77d911");
DTTest("testMultiSample ", "-I " + multiSample, "359a7da40e4803fc5e43e0e5211ef013");
}
}

3
public/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java
View File

@ -50,7 +50,6 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
" -recalFile %s" +
" -tranchesFile %s",
Arrays.asList(params.recalMD5, params.tranchesMD5));
spec.disableShadowBCF(); // TODO -- enable when we support symbolic alleles
executeTest("testVariantRecalibrator-"+params.inVCF, spec).getFirst();
}
@ -99,7 +98,6 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
" -recalFile %s" +
" -tranchesFile %s",
Arrays.asList(params.recalMD5, params.tranchesMD5));
spec.disableShadowBCF(); // TODO -- enable when we support symbolic alleles
executeTest("testVariantRecalibratorIndel-"+params.inVCF, spec).getFirst();
}
@ -116,7 +114,6 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
" -tranchesFile " + getMd5DB().getMD5FilePath(params.tranchesMD5, null) +
" -recalFile " + getMd5DB().getMD5FilePath(params.recalMD5, null),
Arrays.asList(params.cutVCFMD5));
spec.disableShadowBCF(); // TODO -- enable when we support symbolic alleles
executeTest("testApplyRecalibrationIndel-"+params.inVCF, spec);
}