diff --git a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java index e0d91d363..583f067b1 100644 --- a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java +++ b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java @@ -179,7 +179,7 @@ public class GenomeAnalysisTK extends CommandLineProgram { rods.add(hapmap); // { gff, dbsnp }; } if ( HAPMAP_CHIP_FILE != null ) { - ReferenceOrderedData hapmapChip = new ReferenceOrderedData(new File(HAPMAP_CHIP_FILE), rodGFF.class ); + ReferenceOrderedData hapmapChip = new ReferenceOrderedData("hapmap-chip", new File(HAPMAP_CHIP_FILE), rodGFF.class ); rods.add(hapmapChip); } }