diff --git a/perl/runReleaseSanityCheck.pl b/perl/runReleaseSanityCheck.pl index a0b2fe003..b559c139b 100755 --- a/perl/runReleaseSanityCheck.pl +++ b/perl/runReleaseSanityCheck.pl @@ -9,7 +9,7 @@ $sting = "/humgen/gsa-scr1/ebanks/Sting_dev/dist/GenomeAnalysisTK.jar"; GetOptions( "dry!" => \$dry, "sting=s" => \$sting); -$command_prefix = "java -Xmx4096m -jar $sting -R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta"; +$command_prefix = "java -Xmx4096m -jar $sting -R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta -l OFF"; $random_number = rand(); $tmp_bam = "/tmp/$random_number.bam";