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gatk-3.8
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no INFO output now that it's the default 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4014 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2010-08-11 18:56:28 +00:00
parent 7385cce494
commit 86bd55408e
1 changed files with 1 additions and 1 deletions
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2
perl/runReleaseSanityCheck.pl
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@ -9,7 +9,7 @@ $sting = "/humgen/gsa-scr1/ebanks/Sting_dev/dist/GenomeAnalysisTK.jar";
GetOptions( "dry!" => \$dry,
"sting=s" => \$sting);
$command_prefix = "java -Xmx4096m -jar $sting -R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta";
$command_prefix = "java -Xmx4096m -jar $sting -R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta -l OFF";
$random_number = rand();
$tmp_bam = "/tmp/$random_number.bam";