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Missed this integration test during my move of VC from Tribble 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6078 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2011-06-24 20:07:25 +00:00
parent c2ec2891d1
commit 86aa82caf8
1 changed files with 5 additions and 5 deletions
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10
java/test/org/broadinstitute/sting/playground/gatk/walkers/validation/RodSystemValidationIntegrationTest.java
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@ -30,7 +30,7 @@ public class RodSystemValidationIntegrationTest extends WalkerTest {
public void testSimpleVCFPileup() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString1KG() + " -B:eval,VCF3 " + validationDataLocation + "MultiSample.vcf", 1,
Arrays.asList("7dc521914d1fd39cc0cab0220b6187f4"));
Arrays.asList("ad5c01ab5c65877913e885fdb854275c"));
executeTest("testSimpleVCFPileup", spec);
}
@ -41,7 +41,7 @@ public class RodSystemValidationIntegrationTest extends WalkerTest {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString1KG() + " -B:eval,VCF3 " + validationDataLocation + "justHeader.vcf", 1,
Arrays.asList("fa30619829498040414b45ec78151079"));
Arrays.asList("579456b4da3498e80c42483abbdf5926"));
executeTest("testEmptyVCF", spec);
}
@ -52,7 +52,7 @@ public class RodSystemValidationIntegrationTest extends WalkerTest {
baseTestString1KG() + " -B:eval,VCF3 " + validationDataLocation + "MultiSample.vcf" +
" -B:eval2,VCF " + validationDataLocation + "NA12878.chr1_10mb_11mb.slx.indels.vcf4"
, 1,
Arrays.asList("ad9d697a015860089774452886cc1028"));
Arrays.asList("3cabed3262b4474a6316117a13b57edf"));
executeTest("testComplexVCFPileup", spec);
}
@ -62,7 +62,7 @@ public class RodSystemValidationIntegrationTest extends WalkerTest {
baseTestString1KG() + " -B:eval,VCF3 " + validationDataLocation + "MultiSample.vcf" +
" -B:eval2,VCF " + validationDataLocation + "NA12878.chr1_10mb_11mb.slx.indels.vcf4" + " -BTI eval"
, 1,
Arrays.asList("92adff4129bc4c6abb96fb67b8bf61b6"));
Arrays.asList("12876c0980f6cfeae71386e145ac5c82"));
executeTest("testBTIWithROD", spec);
}
@ -74,7 +74,7 @@ public class RodSystemValidationIntegrationTest extends WalkerTest {
" -B:eval3,VCF3 " + validationDataLocation + "CEU_hapmap_nogt_23.vcf" +
" -L 1 -L 2 -L 20"
, 1,
Arrays.asList("2069cc9155af2ec10028acc8df4523b3"));
Arrays.asList("78c4d651d6c0a04b64ccee1dd9d036b9"));
executeTest("testLargeComplexVCFPileup", spec);
}