diff --git a/PairHMM_JNI/.gitignore b/PairHMM_JNI/.gitignore
index a68330124..ce903a6fa 100644
--- a/PairHMM_JNI/.gitignore
+++ b/PairHMM_JNI/.gitignore
@@ -1,6 +1,6 @@
 .svn
 *.o
-#*.so
+*.so
 tests
 .deps
 hmm_Mohammad
diff --git a/PairHMM_JNI/libJNILoglessPairHMM.so b/PairHMM_JNI/libJNILoglessPairHMM.so
deleted file mode 100755
index eed821863..000000000
Binary files a/PairHMM_JNI/libJNILoglessPairHMM.so and /dev/null differ