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Systematic unit tests for the sample object

This commit is contained in:
Mark DePristo 2011-10-03 19:09:02 -07:00
parent 2e3dc52088
commit 867a7476c1
1 changed files with 17 additions and 5 deletions
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22
public/java/test/org/broadinstitute/sting/gatk/samples/SampleUnitTest.java
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@ -36,13 +36,25 @@ public class SampleUnitTest extends BaseTest {
} }
/** /**
* Now test the special getter methods * Now basic getters
*/ */
@Test() @Test()
public void specialGettersTest() { public void normalGettersTest() {
// todo -- test for sample with extra properties, like population Assert.assertEquals("1A", fam1A.getID());
// Assert.assertTrue(sampleC.getID().equals("sampleC")); Assert.assertEquals("fam1", fam1A.getFamilyID());
// Assert.assertTrue(sampleC.getPopulation().equals("pop1")); Assert.assertEquals("1B", fam1A.getPaternalID());
Assert.assertEquals("1C", fam1A.getMaternalID());
Assert.assertEquals(null, fam1B.getPaternalID());
Assert.assertEquals(null, fam1B.getMaternalID());
Assert.assertEquals(Affection.AFFECTED, trait1.getAffection());
Assert.assertEquals(Sample.UNSET_QT, trait1.getQuantitativePhenotype());
Assert.assertEquals(Affection.UNAFFECTED, trait2.getAffection());
Assert.assertEquals(Sample.UNSET_QT, trait2.getQuantitativePhenotype());
Assert.assertEquals(Affection.UNKNOWN, trait3.getAffection());
Assert.assertEquals(Sample.UNSET_QT, trait3.getQuantitativePhenotype());
Assert.assertEquals(Affection.QUANTITATIVE, trait4.getAffection());
Assert.assertEquals(1.0, trait4.getQuantitativePhenotype());
} }
@Test() @Test()