From 8640ca6278c3c0eacf746ccbac3ebb54510350bd Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Sun, 30 Jan 2011 21:22:16 +0000
Subject: [PATCH] Trivial bug fix so that we don't bring the start up
 TraversalEngine banner twice when we only process a single locus

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5129 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../broadinstitute/sting/gatk/traversals/TraversalEngine.java   | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java b/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java
index e3b51a344..76f147b58 100755
--- a/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java
+++ b/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java
@@ -246,7 +246,7 @@ public abstract class TraversalEngine<M,T,WalkerType extends Walker<M,T>,Provide
     private void printProgress(GenomeLoc loc, ReadMetrics metrics, boolean mustPrint) {
         final long nRecords = metrics.getNumIterations();
 
-        if ( nRecords == 1 ) {
+        if ( nRecords == 1 && mustPrint == false ) {
             logger.info("[INITIALIZATION COMPLETE; TRAVERSAL STARTING]");
             logger.info(String.format("%15s processed.%s  runtime per.1M.%s completed total.runtime remaining",
                     "Location", getTraversalType(), getTraversalType()));