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Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/stable

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Eric Banks 2011-11-07 14:59:49 -05:00
parent aa0c8c3600 2d1e385ca4
commit 86312a956a
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public/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrator.java
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@ -66,6 +66,10 @@ import java.util.*;
* the log odds ratio of being a true variant versus being false under the trained Gaussian mixture model.
*
* <p>
* NOTE: In order to create the model reporting plots Rscript needs to be in your environment PATH (this is the scripting version of R, not the interactive version).
* See <a target="r-project" href="http://www.r-project.org">http://www.r-project.org</a> for more info on how to download and install R.
*
* <p>
* See the GATK wiki for a tutorial and example recalibration accuracy plots.
* http://www.broadinstitute.org/gsa/wiki/index.php/Variant_quality_score_recalibration
*