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Merged bug fix from Stable into Unstable

This commit is contained in:
Eric Banks 2013-01-11 11:05:27 -05:00
parent 79b93f659c d78539774f
commit 85baf71b39
1 changed files with 1 additions and 1 deletions
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2
protected/java/src/org/broadinstitute/sting/gatk/walkers/compression/reducereads/SlidingWindow.java
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@ -682,7 +682,7 @@ public class SlidingWindow {
int windowHeaderStart = getStartLocation(windowHeader); int windowHeaderStart = getStartLocation(windowHeader);
for (SimpleGenomeLoc region : regions) { for (SimpleGenomeLoc region : regions) {
if (region.isFinished() && region.getContig() == contig && region.getStart() >= windowHeaderStart && region.getStop() <= windowHeaderStart + windowHeader.size()) { if (region.isFinished() && region.getContig() == contig && region.getStart() >= windowHeaderStart && region.getStop() < windowHeaderStart + windowHeader.size()) {
int start = region.getStart() - windowHeaderStart; int start = region.getStart() - windowHeaderStart;
int stop = region.getStop() - windowHeaderStart; int stop = region.getStop() - windowHeaderStart;