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Add @Advanced to variant_index_type and variant_index_parameter

This commit is contained in:
Joel Thibault 2013-12-03 16:40:31 -05:00
parent 61b50a02b1
commit 8571a641bf
1 changed files with 2 additions and 0 deletions
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2
public/java/src/org/broadinstitute/sting/gatk/arguments/GATKArgumentCollection.java
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@ -473,9 +473,11 @@ public class GATKArgumentCollection {
*/
@Argument(fullName="variant_index_type",shortName = "variant_index_type",doc="which type of IndexCreator to use for VCF/BCF indices",required=false)
@Advanced
public GATKVCFIndexType variant_index_type = GATKVCFUtils.DEFAULT_INDEX_TYPE;
@Argument(fullName="variant_index_parameter",shortName = "variant_index_parameter",doc="the parameter (bin width or features per bin) to pass to the VCF/BCF IndexCreator",required=false)
@Advanced
public int variant_index_parameter = GATKVCFUtils.DEFAULT_INDEX_PARAMETER;
}