From 852e555c00c2613ce7bb178e304888458b313c38 Mon Sep 17 00:00:00 2001
From: delangel <delangel@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 10 May 2011 18:38:25 +0000
Subject: [PATCH] Fix broken functionality from previous commit.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5786 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/walkers/variantutils/CombineVariants.java        | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariants.java b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariants.java
index 6a0eec3d1..9c89aa142 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariants.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariants.java
@@ -153,7 +153,7 @@ public class CombineVariants extends RodWalker<Integer, Integer> {
 
         }
 
-        if (vcs.size() - numFilteredRecords < minimumN)
+        if (minimumN > 1 && (vcs.size() - numFilteredRecords < minimumN))
             return 0;
         
         VariantContext mergedVC = null;