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Merge pull request #817 from broadinstitute/ldg_fixQueueTests 

Change UG @PartitionBy to fix Queue tests
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ldgauthier 2015-03-02 09:49:17 -05:00
parent 8efaa97d84 aaf952469e
commit 83bd85d8de
1 changed files with 1 additions and 0 deletions
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protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/genotyper/UnifiedGenotyper.java
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@ -156,6 +156,7 @@ import java.util.*;
@BAQMode(QualityMode = BAQ.QualityMode.ADD_TAG, ApplicationTime = ReadTransformer.ApplicationTime.ON_INPUT)
@ReadFilters( {BadMateFilter.class, MappingQualityUnavailableFilter.class} )
@Reference(window=@Window(start=-200,stop=200))
@PartitionBy(value = PartitionType.LOCUS, includeUnmapped = false)
@By(DataSource.REFERENCE)
// TODO -- When LocusIteratorByState gets cleaned up, we should enable multiple @By sources:
// TODO -- @By( {DataSource.READS, DataSource.REFERENCE_ORDERED_DATA} )