From 8331c195fbc6387d5c9d16570fa8cbd116f23d99 Mon Sep 17 00:00:00 2001 From: aaron Date: Fri, 28 Aug 2009 16:03:46 +0000 Subject: [PATCH] changed the full name of maximum_reads to maximum_iterations for consistancy git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1475 348d0f76-0448-11de-a6fe-93d51630548a --- .../broadinstitute/sting/gatk/GATKArgumentCollection.java | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java b/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java index 82efa60e3..3d583fd59 100755 --- a/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java +++ b/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java @@ -1,5 +1,6 @@ package org.broadinstitute.sting.gatk; +import net.sf.samtools.SAMFileReader; import org.broadinstitute.sting.utils.StingException; import org.broadinstitute.sting.utils.cmdLine.Argument; import org.simpleframework.xml.*; @@ -14,8 +15,6 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import net.sf.samtools.SAMFileReader; - /** * * User: aaron @@ -99,7 +98,7 @@ public class GATKArgumentCollection { public String outErrFileName = null; @Element(required = false) - @Argument(fullName = "maximum_reads", shortName = "M", doc = "Maximum number of iterations to process before exiting, the lower bound is zero. Intended only for testing", required = false) + @Argument(fullName = "maximum_iterations", shortName = "M", doc = "Maximum number of iterations to process before exiting, the lower bound is zero. Intended only for testing", required = false) public Integer maximumEngineIterations = -1; @Element(required = false)