diff --git a/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java b/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java index 82efa60e3..3d583fd59 100755 --- a/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java +++ b/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java @@ -1,5 +1,6 @@ package org.broadinstitute.sting.gatk; +import net.sf.samtools.SAMFileReader; import org.broadinstitute.sting.utils.StingException; import org.broadinstitute.sting.utils.cmdLine.Argument; import org.simpleframework.xml.*; @@ -14,8 +15,6 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import net.sf.samtools.SAMFileReader; - /** * * User: aaron @@ -99,7 +98,7 @@ public class GATKArgumentCollection { public String outErrFileName = null; @Element(required = false) - @Argument(fullName = "maximum_reads", shortName = "M", doc = "Maximum number of iterations to process before exiting, the lower bound is zero. Intended only for testing", required = false) + @Argument(fullName = "maximum_iterations", shortName = "M", doc = "Maximum number of iterations to process before exiting, the lower bound is zero. Intended only for testing", required = false) public Integer maximumEngineIterations = -1; @Element(required = false)