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Fixed MD5 broken by PR #1440.

This commit is contained in:
Samuel Lee 2016-07-27 13:44:12 -04:00
parent 9a6ce7a347
commit 832a383acd
1 changed files with 1 additions and 1 deletions
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2
protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/haplotypecaller/HaplotypeCallerGVCFIntegrationTest.java
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@ -345,7 +345,7 @@ public class HaplotypeCallerGVCFIntegrationTest extends WalkerTest {
public void testBetaTestingAnnotationGroup() { public void testBetaTestingAnnotationGroup() {
final String commandLine = String.format("-T HaplotypeCaller --pcr_indel_model NONE -pairHMMSub %s %s -R %s -I %s -L %s -ERC GVCF --no_cmdline_in_header -variant_index_type %s -variant_index_parameter %d -G BetaTesting --disableDithering", final String commandLine = String.format("-T HaplotypeCaller --pcr_indel_model NONE -pairHMMSub %s %s -R %s -I %s -L %s -ERC GVCF --no_cmdline_in_header -variant_index_type %s -variant_index_parameter %d -G BetaTesting --disableDithering",
HMM_SUB_IMPLEMENTATION, ALWAYS_LOAD_VECTOR_HMM, b37KGReference, privateTestDir + "NA12878.HiSeq.b37.chr20.10_11mb.bam", "20:10433000-10437000", GATKVCFUtils.DEFAULT_GVCF_INDEX_TYPE, GATKVCFUtils.DEFAULT_GVCF_INDEX_PARAMETER); HMM_SUB_IMPLEMENTATION, ALWAYS_LOAD_VECTOR_HMM, b37KGReference, privateTestDir + "NA12878.HiSeq.b37.chr20.10_11mb.bam", "20:10433000-10437000", GATKVCFUtils.DEFAULT_GVCF_INDEX_TYPE, GATKVCFUtils.DEFAULT_GVCF_INDEX_PARAMETER);
final WalkerTestSpec spec = new WalkerTestSpec(commandLine + " -o %s", Collections.singletonList("df746da577c1d8a340f93b9d5df4df80")); final WalkerTestSpec spec = new WalkerTestSpec(commandLine + " -o %s", Collections.singletonList("f248a6c4a7645dc5cc9f5ec9f81d9ad5"));
spec.disableShadowBCF(); spec.disableShadowBCF();
executeTest(" testASMQMateRankSumAnnotation", spec); executeTest(" testASMQMateRankSumAnnotation", spec);
} }