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gatk-3.8
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Throw the right exception 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4666 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2010-11-13 22:18:42 +00:00
parent ac52b64b77
commit 82f9327b5e
1 changed files with 3 additions and 3 deletions
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6
java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/Tranche.java
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@ -120,7 +120,7 @@ public class Tranche implements Comparable<Tranche> {
if ( bindings.containsKey(key) ) if ( bindings.containsKey(key) )
return Double.valueOf(bindings.get(key)); return Double.valueOf(bindings.get(key));
else if ( required ) { else if ( required ) {
throw new UserException("Malformed tranches file. Missing required key " + key); throw new UserException.MalformedFile("Malformed tranches file. Missing required key " + key);
} }
else else
return -1; return -1;
@ -130,7 +130,7 @@ public class Tranche implements Comparable<Tranche> {
if ( bindings.containsKey(key) ) if ( bindings.containsKey(key) )
return Integer.valueOf(bindings.get(key)); return Integer.valueOf(bindings.get(key));
else if ( required ) { else if ( required ) {
throw new UserException("Malformed tranches file. Missing required key " + key); throw new UserException.MalformedFile("Malformed tranches file. Missing required key " + key);
} }
else else
return -1; return -1;
@ -177,4 +177,4 @@ public class Tranche implements Comparable<Tranche> {
throw new UserException.CouldNotReadInputFile(f, e); throw new UserException.CouldNotReadInputFile(f, e);
} }
} }
} }