From 82c37fceb5ad0765739a9b90d12c946b39db2bb6 Mon Sep 17 00:00:00 2001 From: kshakir Date: Thu, 29 Jul 2010 19:45:12 +0000 Subject: [PATCH] Create intermediate directories and don't error if the directory already exists. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3899 348d0f76-0448-11de-a6fe-93d51630548a --- .../queue/function/scattergather/CreateTempDirsFunction.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scala/src/org/broadinstitute/sting/queue/function/scattergather/CreateTempDirsFunction.scala b/scala/src/org/broadinstitute/sting/queue/function/scattergather/CreateTempDirsFunction.scala index 8e31bf091..17e185e10 100644 --- a/scala/src/org/broadinstitute/sting/queue/function/scattergather/CreateTempDirsFunction.scala +++ b/scala/src/org/broadinstitute/sting/queue/function/scattergather/CreateTempDirsFunction.scala @@ -11,5 +11,5 @@ class CreateTempDirsFunction extends CommandLineFunction { @Output(doc="Temporary directories to create") var tempDirectories: List[File] = Nil - def commandLine = "mkdir%s".format(repeat(" '", tempDirectories, "'")) + def commandLine = "mkdir -pv%s".format(repeat(" '", tempDirectories, "'")) }