Added exceptions to CGL walker

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* Assert that a user provided a VCF not some other type of ROD
   * Assert that the VCF has samples
   * Assert that the samples in the BAM exist in the VCF
   * Warn the user if not all samples in the BAM are present in the VCF

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This commit is contained in:

Mauricio Carneiro 2012-01-14 14:10:19 -05:00

parent cec7107762

commit 8272c8bd26

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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