No more Filtered Reads tag.
All synthetic reads are marked with the reduced read tag.
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@ -45,7 +45,6 @@ import java.util.Map;
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*/
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public class GATKSAMRecord extends BAMRecord {
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public class GATKSAMRecord extends BAMRecord {
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public static final String REDUCED_READ_CONSENSUS_TAG = "RR";
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public static final String REDUCED_READ_CONSENSUS_TAG = "RR";
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public static final String REDUCED_READ_FILTERED_TAG = "RF";
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// the SAMRecord data we're caching
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// the SAMRecord data we're caching
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private String mReadString = null;
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private String mReadString = null;
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