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Forgot to update UG performance test to reflect the new -o argument. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4079 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2010-08-23 00:57:16 +00:00
parent c177801d81
commit 8252494fa9
1 changed files with 3 additions and 3 deletions
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6
java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java
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@ -15,7 +15,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
" -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" + " -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" +
" -L chr1:1-50,000,000" + " -L chr1:1-50,000,000" +
" -D " + GATKDataLocation + "dbsnp_129_hg18.rod" + " -D " + GATKDataLocation + "dbsnp_129_hg18.rod" +
" -varout /dev/null", " -o /dev/null",
0, 0,
new ArrayList<String>(0)); new ArrayList<String>(0));
executeTest("testUnifiedGenotyperWholeGenome", spec); executeTest("testUnifiedGenotyperWholeGenome", spec);
@ -29,7 +29,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
" -I " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.bam" + " -I " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.bam" +
" -L " + evaluationDataLocation + "whole_exome_agilent_designed_120.targets.chr1.interval_list" + " -L " + evaluationDataLocation + "whole_exome_agilent_designed_120.targets.chr1.interval_list" +
" -D " + GATKDataLocation + "dbsnp_129_hg18.rod" + " -D " + GATKDataLocation + "dbsnp_129_hg18.rod" +
" -varout /dev/null", " -o /dev/null",
0, 0,
new ArrayList<String>(0)); new ArrayList<String>(0));
executeTest("testUnifiedGenotyperWholeExome", spec); executeTest("testUnifiedGenotyperWholeExome", spec);
@ -44,7 +44,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
" -L chr1:1-50,000,000" + " -L chr1:1-50,000,000" +
" -nt 10" + " -nt 10" +
" -D " + GATKDataLocation + "dbsnp_129_hg18.rod" + " -D " + GATKDataLocation + "dbsnp_129_hg18.rod" +
" -varout /dev/null", " -o /dev/null",
0, 0,
new ArrayList<String>(0)); new ArrayList<String>(0));
executeTest("testUnifiedGenotyperWGParallel", spec); executeTest("testUnifiedGenotyperWGParallel", spec);