diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java index 756416d5c..5eba70f2b 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java @@ -15,7 +15,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest { " -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" + " -L chr1:1-50,000,000" + " -D " + GATKDataLocation + "dbsnp_129_hg18.rod" + - " -varout /dev/null", + " -o /dev/null", 0, new ArrayList(0)); executeTest("testUnifiedGenotyperWholeGenome", spec); @@ -29,7 +29,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest { " -I " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.bam" + " -L " + evaluationDataLocation + "whole_exome_agilent_designed_120.targets.chr1.interval_list" + " -D " + GATKDataLocation + "dbsnp_129_hg18.rod" + - " -varout /dev/null", + " -o /dev/null", 0, new ArrayList(0)); executeTest("testUnifiedGenotyperWholeExome", spec); @@ -44,7 +44,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest { " -L chr1:1-50,000,000" + " -nt 10" + " -D " + GATKDataLocation + "dbsnp_129_hg18.rod" + - " -varout /dev/null", + " -o /dev/null", 0, new ArrayList(0)); executeTest("testUnifiedGenotyperWGParallel", spec);