From 821e8b1c5f6d1d63eb5a4d2bff713588c49bf06f Mon Sep 17 00:00:00 2001 From: aaron Date: Fri, 16 Apr 2010 19:16:16 +0000 Subject: [PATCH] more cleanup. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3189 348d0f76-0448-11de-a6fe-93d51630548a --- .../gatk/refdata/SNPCallFromGenotypes.java | 25 ------------------- 1 file changed, 25 deletions(-) delete mode 100755 java/src/org/broadinstitute/sting/gatk/refdata/SNPCallFromGenotypes.java diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/SNPCallFromGenotypes.java b/java/src/org/broadinstitute/sting/gatk/refdata/SNPCallFromGenotypes.java deleted file mode 100755 index 9b5ab6985..000000000 --- a/java/src/org/broadinstitute/sting/gatk/refdata/SNPCallFromGenotypes.java +++ /dev/null @@ -1,25 +0,0 @@ -package org.broadinstitute.sting.gatk.refdata; - -import org.broadinstitute.sting.utils.genotype.Variation; - -import org.broadinstitute.sting.utils.genotype.Genotype; - -import java.util.List; - -/** - * loc ref alt EM_alt_freq discovery_likelihood discovery_null discovery_prior discovery_lod EM_N n_ref n_het n_hom - * chr1:1104840 A N 0.000000 -85.341265 -85.341265 0.000000 0.000000 324.000000 162 0 0 - * chr1:1104841 C N 0.000000 -69.937928 -69.937928 0.000000 0.000000 324.000000 162 0 0 - * chr1:1104842 A N 0.000000 -84.816002 -84.816002 0.000000 0.000000 324.000000 162 0 0 - */ -public interface SNPCallFromGenotypes extends Variation { - public int nIndividuals(); - - public int nHomRefGenotypes(); - - public int nHetGenotypes(); - - public int nHomVarGenotypes(); - - public List getGenotypes(); -} \ No newline at end of file