diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/SNPCallFromGenotypes.java b/java/src/org/broadinstitute/sting/gatk/refdata/SNPCallFromGenotypes.java deleted file mode 100755 index 9b5ab6985..000000000 --- a/java/src/org/broadinstitute/sting/gatk/refdata/SNPCallFromGenotypes.java +++ /dev/null @@ -1,25 +0,0 @@ -package org.broadinstitute.sting.gatk.refdata; - -import org.broadinstitute.sting.utils.genotype.Variation; - -import org.broadinstitute.sting.utils.genotype.Genotype; - -import java.util.List; - -/** - * loc ref alt EM_alt_freq discovery_likelihood discovery_null discovery_prior discovery_lod EM_N n_ref n_het n_hom - * chr1:1104840 A N 0.000000 -85.341265 -85.341265 0.000000 0.000000 324.000000 162 0 0 - * chr1:1104841 C N 0.000000 -69.937928 -69.937928 0.000000 0.000000 324.000000 162 0 0 - * chr1:1104842 A N 0.000000 -84.816002 -84.816002 0.000000 0.000000 324.000000 162 0 0 - */ -public interface SNPCallFromGenotypes extends Variation { - public int nIndividuals(); - - public int nHomRefGenotypes(); - - public int nHetGenotypes(); - - public int nHomVarGenotypes(); - - public List getGenotypes(); -} \ No newline at end of file