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more cleanup. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3189 348d0f76-0448-11de-a6fe-93d51630548a
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aaron 2010-04-16 19:16:16 +00:00
parent e11ca74eb5
commit 821e8b1c5f
1 changed files with 0 additions and 25 deletions
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25
java/src/org/broadinstitute/sting/gatk/refdata/SNPCallFromGenotypes.java
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@ -1,25 +0,0 @@
package org.broadinstitute.sting.gatk.refdata;
import org.broadinstitute.sting.utils.genotype.Variation;
import org.broadinstitute.sting.utils.genotype.Genotype;
import java.util.List;
/**
* loc ref alt EM_alt_freq discovery_likelihood discovery_null discovery_prior discovery_lod EM_N n_ref n_het n_hom
* chr1:1104840 A N 0.000000 -85.341265 -85.341265 0.000000 0.000000 324.000000 162 0 0
* chr1:1104841 C N 0.000000 -69.937928 -69.937928 0.000000 0.000000 324.000000 162 0 0
* chr1:1104842 A N 0.000000 -84.816002 -84.816002 0.000000 0.000000 324.000000 162 0 0
*/
public interface SNPCallFromGenotypes extends Variation {
public int nIndividuals();
public int nHomRefGenotypes();
public int nHetGenotypes();
public int nHomVarGenotypes();
public List<Genotype> getGenotypes();
}