From 816c86776e94f6911c69815d769dedad2d1f7420 Mon Sep 17 00:00:00 2001 From: ebanks Date: Thu, 4 Nov 2010 02:17:09 +0000 Subject: [PATCH] Walker description was wrong and it was bothering me git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4624 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/variantutils/VariantsToTable.java | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java index f36f390df..0af98de9b 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java @@ -39,15 +39,11 @@ import java.io.PrintStream; import java.util.*; /** - * Combines VCF records from different sources; supports both full merges and set unions. - * Merge: combines multiple records into a single one; if sample names overlap then they are uniquified. - * Union: assumes each rod represents the same set of samples (although this is not enforced); using the - * priority list (if provided), emits a single record instance at every position represented in the rods. + * Emits specific fields as dictated by the user from one or more VCF files. */ -//@Reference(window=@Window(start=-50,stop=50)) @Requires(value={}) public class VariantsToTable extends RodWalker { - @Output(doc="File to which variants should be written",required=true) + @Output(doc="File to which results should be written",required=true) protected PrintStream out; @Argument(fullName="fields", shortName="F", doc="Fields to emit from the VCF, allows any VCF field, any info field, and some meta fields like nHets", required=true)