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Walker description was wrong and it was bothering me 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4624 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2010-11-04 02:17:09 +00:00
parent 87f6738d4c
commit 816c86776e
1 changed files with 2 additions and 6 deletions
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8
java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java
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@ -39,15 +39,11 @@ import java.io.PrintStream;
import java.util.*;
/**
* Combines VCF records from different sources; supports both full merges and set unions.
* Merge: combines multiple records into a single one; if sample names overlap then they are uniquified.
* Union: assumes each rod represents the same set of samples (although this is not enforced); using the
* priority list (if provided), emits a single record instance at every position represented in the rods.
* Emits specific fields as dictated by the user from one or more VCF files.
*/
//@Reference(window=@Window(start=-50,stop=50))
@Requires(value={})
public class VariantsToTable extends RodWalker<Integer, Integer> {
@Output(doc="File to which variants should be written",required=true)
@Output(doc="File to which results should be written",required=true)
protected PrintStream out;
@Argument(fullName="fields", shortName="F", doc="Fields to emit from the VCF, allows any VCF field, any info field, and some meta fields like nHets", required=true)