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Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable

This commit is contained in:
Mark DePristo 2011-08-27 10:50:15 -04:00
parent 1ceb020fae 50908fe285
commit 810a71c631
1 changed files with 14 additions and 5 deletions
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19
build.xml
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@ -48,8 +48,9 @@
<property name="scaladoc.dir" value="scaladoc" /> <property name="scaladoc.dir" value="scaladoc" />
<!-- Contracts for Java --> <!-- Contracts for Java -->
<!-- To disable, run with -Duse.contracts=false --> <!-- By default, enabled only for test targets -->
<property name="use.contracts" value="false" /> <!-- To disable for test targets, run with -Duse.contracts=false -->
<!-- To enable for non-test targets, run with -Duse.contracts=true -->
<property name="java.contracts" value="${build.dir}/java/contracts" /> <property name="java.contracts" value="${build.dir}/java/contracts" />
<property name="contracts.version" value="1.0-20110609" /> <property name="contracts.version" value="1.0-20110609" />
<property name="cofoja.jar" value="${lib.dir}/cofoja-${contracts.version}.jar"/> <property name="cofoja.jar" value="${lib.dir}/cofoja-${contracts.version}.jar"/>
@ -176,6 +177,10 @@
<property name="scala.target" value="core"/> <property name="scala.target" value="core"/>
</target> </target>
<target name="init.usecontracts">
<property name="use.contracts" value="true" />
</target>
<target name="git.describe"> <target name="git.describe">
<exec executable="git" outputproperty="git.describe.output" resultproperty="git.describe.exit.value" failonerror="false"> <exec executable="git" outputproperty="git.describe.output" resultproperty="git.describe.exit.value" failonerror="false">
<arg line="describe" /> <arg line="describe" />
@ -485,11 +490,16 @@
<pathelement location="${java.classes}" /> <pathelement location="${java.classes}" />
</path> </path>
<!-- Run with -Dgatkdocs.include.hidden=true to include documentation for hidden features -->
<condition property="gatkdocs.include.hidden.arg" value="-include-hidden" else="">
<isset property="gatkdocs.include.hidden" />
</condition>
<javadoc doclet="org.broadinstitute.sting.utils.help.GATKDoclet" <javadoc doclet="org.broadinstitute.sting.utils.help.GATKDoclet"
docletpathref="doclet.classpath" docletpathref="doclet.classpath"
classpathref="external.dependencies" classpathref="external.dependencies"
classpath="${java.classes}" classpath="${java.classes}"
additionalparam="-private -build-timestamp &quot;${build.timestamp}&quot; -absolute-version ${build.version} -quiet -J-Xdebug -J-Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005"> <!-- -test to only do DocumentationTest walker --> additionalparam="${gatkdocs.include.hidden.arg} -private -build-timestamp &quot;${build.timestamp}&quot; -absolute-version ${build.version} -quiet -J-Xdebug -J-Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005"> <!-- -test to only do DocumentationTest walker -->
<sourcefiles> <sourcefiles>
<union> <union>
<fileset refid="all.java.source.files"/> <fileset refid="all.java.source.files"/>
@ -744,8 +754,7 @@
</scalac> </scalac>
</target> </target>
<target name="test.compile" depends="test.java.compile,test.scala.compile"> <target name="test.compile" depends="init.usecontracts,test.java.compile,test.scala.compile" />
</target>
<!-- new scala target --> <!-- new scala target -->