From 80c13f712767a7c3db5024fb0c0fdd0d29a08910 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 14 May 2009 13:55:52 +0000
Subject: [PATCH] Added a getter for command-line arguments.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@695 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../broadinstitute/sting/gatk/GenomeAnalysisEngine.java    | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
index 2710aad25..b710ac252 100755
--- a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
+++ b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
@@ -307,4 +307,11 @@ public class GenomeAnalysisEngine {
     public TraversalEngine getEngine() {
         return this.engine;
     }
+
+    /**
+     * Gets the collection of GATK main application arguments for enhanced walker validation.
+     */
+    public GATKArgumentCollection getArguments() {
+        return this.argCollection;
+    }
 }