diff --git a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java index 2710aad25..b710ac252 100755 --- a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java +++ b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java @@ -307,4 +307,11 @@ public class GenomeAnalysisEngine { public TraversalEngine getEngine() { return this.engine; } + + /** + * Gets the collection of GATK main application arguments for enhanced walker validation. + */ + public GATKArgumentCollection getArguments() { + return this.argCollection; + } }