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VariantRecalibrator test currently doesn't work with shadowBCF

This commit is contained in:
Mark DePristo 2012-06-25 20:56:00 -04:00
parent 5f5885ec78
commit 7ef5ce28cc
1 changed files with 1 additions and 0 deletions
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public/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java
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@ -70,6 +70,7 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
" -tranchesFile " + getMd5DB().getMD5FilePath(params.tranchesMD5, null) + " -tranchesFile " + getMd5DB().getMD5FilePath(params.tranchesMD5, null) +
" -recalFile " + getMd5DB().getMD5FilePath(params.recalMD5, null), " -recalFile " + getMd5DB().getMD5FilePath(params.recalMD5, null),
Arrays.asList(params.cutVCFMD5)); Arrays.asList(params.cutVCFMD5));
spec.disableShadowBCF(); // TODO -- enable when we support symbolic alleles
executeTest("testApplyRecalibration-"+params.inVCF, spec); executeTest("testApplyRecalibration-"+params.inVCF, spec);
} }