From 7ec805bef7af9ac13618ba116902612a340d210c Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 22 Dec 2010 20:17:04 +0000
Subject: [PATCH] should be uncommented

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4900 348d0f76-0448-11de-a6fe-93d51630548a
---
 shell/runGATKReport.csh | 22 +++++++++++-----------
 1 file changed, 11 insertions(+), 11 deletions(-)

diff --git a/shell/runGATKReport.csh b/shell/runGATKReport.csh
index ccbf231e0..c192807dd 100755
--- a/shell/runGATKReport.csh
+++ b/shell/runGATKReport.csh
@@ -2,8 +2,8 @@
 
 source /broad/tools/scripts/useuse
 
-# reuse Python-2.5
-# use R-2.11
+reuse Python-2.5
+use R-2.11
 
 setenv DIR /humgen/gsa-hpprojects/GATK/reports 
 setenv ARCHIVE_DIR $DIR/archive
@@ -15,18 +15,18 @@ setenv GATK ~/dev/GenomeAnalysisTK/trunk
 
 cd $DIR
 
-# echo "Archiving recently submitted jobs"
-# python $GATK/python/analyzeRunReports.py archive $DIR/submitted -o $ARCHIVE.gz -D
+echo "Archiving recently submitted jobs"
+python $GATK/python/analyzeRunReports.py archive $DIR/submitted -o $ARCHIVE.gz -D
 
-# echo "All runs"
-# python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1
+echo "All runs"
+python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1
 
-# echo "No-dev"
-# python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1 --no-dev
-# python $GATK/python/analyzeRunReports.py exceptions $ARCHIVE.gz --max_days 1 -E sting --no-dev
+echo "No-dev"
+python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1 --no-dev
+python $GATK/python/analyzeRunReports.py exceptions $ARCHIVE.gz --max_days 1 -E sting --no-dev
 
-#echo "Archive directory contents"
-#ls -ltrh $ARCHIVE_DIR
+echo "Archive directory contents"
+ls -ltrh $ARCHIVE_DIR
 
 foreach maxDays ( 7 30 360 ) 
     echo "Creating table"