diff --git a/shell/runGATKReport.csh b/shell/runGATKReport.csh index ccbf231e0..c192807dd 100755 --- a/shell/runGATKReport.csh +++ b/shell/runGATKReport.csh @@ -2,8 +2,8 @@ source /broad/tools/scripts/useuse -# reuse Python-2.5 -# use R-2.11 +reuse Python-2.5 +use R-2.11 setenv DIR /humgen/gsa-hpprojects/GATK/reports setenv ARCHIVE_DIR $DIR/archive @@ -15,18 +15,18 @@ setenv GATK ~/dev/GenomeAnalysisTK/trunk cd $DIR -# echo "Archiving recently submitted jobs" -# python $GATK/python/analyzeRunReports.py archive $DIR/submitted -o $ARCHIVE.gz -D +echo "Archiving recently submitted jobs" +python $GATK/python/analyzeRunReports.py archive $DIR/submitted -o $ARCHIVE.gz -D -# echo "All runs" -# python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1 +echo "All runs" +python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1 -# echo "No-dev" -# python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1 --no-dev -# python $GATK/python/analyzeRunReports.py exceptions $ARCHIVE.gz --max_days 1 -E sting --no-dev +echo "No-dev" +python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1 --no-dev +python $GATK/python/analyzeRunReports.py exceptions $ARCHIVE.gz --max_days 1 -E sting --no-dev -#echo "Archive directory contents" -#ls -ltrh $ARCHIVE_DIR +echo "Archive directory contents" +ls -ltrh $ARCHIVE_DIR foreach maxDays ( 7 30 360 ) echo "Creating table"