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should be uncommented 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4900 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2010-12-22 20:17:04 +00:00
parent b024b85798
commit 7ec805bef7
1 changed files with 11 additions and 11 deletions
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22
shell/runGATKReport.csh
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@ -2,8 +2,8 @@
source /broad/tools/scripts/useuse
# reuse Python-2.5
# use R-2.11
reuse Python-2.5
use R-2.11
setenv DIR /humgen/gsa-hpprojects/GATK/reports
setenv ARCHIVE_DIR $DIR/archive
@ -15,18 +15,18 @@ setenv GATK ~/dev/GenomeAnalysisTK/trunk
cd $DIR
# echo "Archiving recently submitted jobs"
# python $GATK/python/analyzeRunReports.py archive $DIR/submitted -o $ARCHIVE.gz -D
echo "Archiving recently submitted jobs"
python $GATK/python/analyzeRunReports.py archive $DIR/submitted -o $ARCHIVE.gz -D
# echo "All runs"
# python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1
echo "All runs"
python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1
# echo "No-dev"
# python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1 --no-dev
# python $GATK/python/analyzeRunReports.py exceptions $ARCHIVE.gz --max_days 1 -E sting --no-dev
echo "No-dev"
python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1 --no-dev
python $GATK/python/analyzeRunReports.py exceptions $ARCHIVE.gz --max_days 1 -E sting --no-dev
#echo "Archive directory contents"
#ls -ltrh $ARCHIVE_DIR
echo "Archive directory contents"
ls -ltrh $ARCHIVE_DIR
foreach maxDays ( 7 30 360 )
echo "Creating table"