From 7eb45b40380879ec78a1d33f351e4ff09a27edcd Mon Sep 17 00:00:00 2001
From: Mauricio Carneiro <carneiro@broadinstitute.org>
Date: Mon, 9 Jul 2012 13:55:12 -0400
Subject: [PATCH] Fixed BQSR IntegrationTests

   * BinaryTag covariate is Experimental, not Standard (this was breaking integration tests)
   * New parameter in the Recalibration report requires new MD5 for one of the integration tests.
---
 .../sting/gatk/walkers/bqsr/BinaryTagCovariate.java             | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/BinaryTagCovariate.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/BinaryTagCovariate.java
index 424d076b7..a89586c2c 100644
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/BinaryTagCovariate.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/BinaryTagCovariate.java
@@ -9,7 +9,7 @@ import org.broadinstitute.sting.utils.sam.GATKSAMRecord;
  * @author Mauricio Carneiro
  * @since 7/6/12
  */
-public class BinaryTagCovariate implements StandardCovariate {
+public class BinaryTagCovariate implements ExperimentalCovariate {
 
     private String tag;