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Better error message for name/type clashes.

This commit is contained in:
Eric Banks 2011-08-12 11:18:14 -04:00
parent 27f0748b33
commit 7ea9196321
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/utils/text/ListFileUtils.java
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@ -160,7 +160,7 @@ public class ListFileUtils {
rodBinding.getName(), rodBinding.getTribbleType(), builderForValidation.userFriendlyListOfAvailableFeatures())); rodBinding.getName(), rodBinding.getTribbleType(), builderForValidation.userFriendlyListOfAvailableFeatures()));
if ( ! rodBinding.getType().isAssignableFrom(descriptor.getFeatureClass()) ) if ( ! rodBinding.getType().isAssignableFrom(descriptor.getFeatureClass()) )
throw new UserException.BadArgumentValue(rodBinding.getName(), throw new UserException.BadArgumentValue(rodBinding.getName(),
String.format("Field %s expected type %s, but the type of the input file provided on the command line was %s", String.format("Field %s expected type %s, but the type of the input file provided on the command line was %s. Please make sure that you have provided the correct file type and/or that you are not binding your rod to a name matching one of the available types.",
rodBinding.getName(), rodBinding.getType(), descriptor.getName())); rodBinding.getName(), rodBinding.getType(), descriptor.getName()));