From 7ddd45d059073001645d37611d06d28ad996fe76 Mon Sep 17 00:00:00 2001 From: ebanks Date: Wed, 10 Mar 2010 03:09:13 +0000 Subject: [PATCH] Hmm. I thought I removed this already. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2973 348d0f76-0448-11de-a6fe-93d51630548a --- .../sequenom/PlinkToVCFIntegrationTest.java | 26 ------------------- 1 file changed, 26 deletions(-) delete mode 100644 java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java deleted file mode 100644 index b935ae76b..000000000 --- a/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java +++ /dev/null @@ -1,26 +0,0 @@ -package org.broadinstitute.sting.playground.gatk.walkers.variantstovcf; - -import org.broadinstitute.sting.WalkerTest; -import org.junit.Test; - -import java.util.Arrays; - -public class PlinkToVCFIntegrationTest extends WalkerTest { - @Test - public void testSNPs() { - String testPedFile = validationDataLocation + "Sequenom_Test_File.txt"; - String testArgs = "-R "+oneKGLocation+"reference/human_b36_both.fasta -T PlinkToVCF -B input,Plink,"+testPedFile+" -vcf %s"; - WalkerTest.WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1, - Arrays.asList("02dcb683db503599efed0b76daa8fcba")); - executeTest("Test SNPs", spec); - } - - @Test - public void testIndels() { - String testPedFile = validationDataLocation + "pilot2_indel_validation.renamed.ped"; - String testArgs = "-R "+oneKGLocation+"reference/human_b36_both.fasta -T PlinkToVCF -B input,Plink,"+testPedFile+" -vcf %s"; - WalkerTest.WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1, - Arrays.asList("e72c0ab95b279a4d39cc14d40770a801")); - executeTest("Test Indels", spec); - } -}