diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java
deleted file mode 100644
index b935ae76b..000000000
--- a/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java
+++ /dev/null
@@ -1,26 +0,0 @@
-package org.broadinstitute.sting.playground.gatk.walkers.variantstovcf;
-
-import org.broadinstitute.sting.WalkerTest;
-import org.junit.Test;
-
-import java.util.Arrays;
-
-public class PlinkToVCFIntegrationTest extends WalkerTest {
-    @Test
-    public void testSNPs() {
-        String testPedFile = validationDataLocation + "Sequenom_Test_File.txt";
-        String testArgs = "-R "+oneKGLocation+"reference/human_b36_both.fasta -T PlinkToVCF -B input,Plink,"+testPedFile+" -vcf %s";
-        WalkerTest.WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1,
-                Arrays.asList("02dcb683db503599efed0b76daa8fcba"));
-        executeTest("Test SNPs", spec);
-    }
-
-    @Test
-    public void testIndels() {
-        String testPedFile = validationDataLocation + "pilot2_indel_validation.renamed.ped";
-        String testArgs = "-R "+oneKGLocation+"reference/human_b36_both.fasta -T PlinkToVCF -B input,Plink,"+testPedFile+" -vcf %s";
-        WalkerTest.WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1,
-                Arrays.asList("e72c0ab95b279a4d39cc14d40770a801"));
-        executeTest("Test Indels", spec);
-    }
-}