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Hmm. I thought I removed this already. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2973 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-03-10 03:09:13 +00:00
parent 1a576525e9
commit 7ddd45d059
1 changed files with 0 additions and 26 deletions
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26
java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java
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@ -1,26 +0,0 @@
package org.broadinstitute.sting.playground.gatk.walkers.variantstovcf;
import org.broadinstitute.sting.WalkerTest;
import org.junit.Test;
import java.util.Arrays;
public class PlinkToVCFIntegrationTest extends WalkerTest {
@Test
public void testSNPs() {
String testPedFile = validationDataLocation + "Sequenom_Test_File.txt";
String testArgs = "-R "+oneKGLocation+"reference/human_b36_both.fasta -T PlinkToVCF -B input,Plink,"+testPedFile+" -vcf %s";
WalkerTest.WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1,
Arrays.asList("02dcb683db503599efed0b76daa8fcba"));
executeTest("Test SNPs", spec);
}
@Test
public void testIndels() {
String testPedFile = validationDataLocation + "pilot2_indel_validation.renamed.ped";
String testArgs = "-R "+oneKGLocation+"reference/human_b36_both.fasta -T PlinkToVCF -B input,Plink,"+testPedFile+" -vcf %s";
WalkerTest.WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1,
Arrays.asList("e72c0ab95b279a4d39cc14d40770a801"));
executeTest("Test Indels", spec);
}
}