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Merge branch 'laptop'

This commit is contained in:
Kiran V Garimella 2011-07-23 01:01:11 -04:00
parent b5deff48e6 58eed20b83
commit 7da99388ac
1 changed files with 2 additions and 1 deletions
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3
public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java
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@ -266,7 +266,8 @@ public class PhaseByTransmission extends RodWalker<Integer, Integer> {
} }
} }
Map<String, Object> attributes = bestChildGenotype.getAttributes(); Map<String, Object> attributes = new HashMap<String, Object>();
attributes.putAll(bestChildGenotype.getAttributes());
attributes.put(TRANSMISSION_PROBABILITY_TAG_NAME, bestPrior*bestConfigurationLikelihood / norm); attributes.put(TRANSMISSION_PROBABILITY_TAG_NAME, bestPrior*bestConfigurationLikelihood / norm);
bestChildGenotype = Genotype.modifyAttributes(bestChildGenotype, attributes); bestChildGenotype = Genotype.modifyAttributes(bestChildGenotype, attributes);