diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java index fb5267369..12a657d7c 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java @@ -266,7 +266,8 @@ public class PhaseByTransmission extends RodWalker { } } - Map attributes = bestChildGenotype.getAttributes(); + Map attributes = new HashMap(); + attributes.putAll(bestChildGenotype.getAttributes()); attributes.put(TRANSMISSION_PROBABILITY_TAG_NAME, bestPrior*bestConfigurationLikelihood / norm); bestChildGenotype = Genotype.modifyAttributes(bestChildGenotype, attributes);