From 7d755a4c90f4dc40a0c042eca9013783dbfce563 Mon Sep 17 00:00:00 2001 From: aaron Date: Tue, 14 Jul 2009 17:22:28 +0000 Subject: [PATCH] GenotypeLikelihoods doesn't emit metrics, they don't make sense git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1236 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java | 1 - 1 file changed, 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java index d844379c4..ec28cddb7 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java @@ -31,7 +31,6 @@ import java.util.List; @ReadFilters(ZeroMappingQualityReadFilter.class) public class GenotypeLikelihoodsWalker extends LocusWalker { @Argument(fullName = "variants_out", shortName = "varout", doc = "File to which variants should be written", required = true) public File VARIANTS_FILE; - @Argument(fullName = "metrics_out", shortName = "metout", doc = "File to which metrics should be written", required = false) public File METRICS_FILE = new File("/dev/stderr"); @Argument(fullName = "variant_output_format", shortName = "vf", doc = "File to which metrics should be written", required = false) public GenotypeWriterFactory.GENOTYPE_FORMAT VAR_FORMAT = GenotypeWriterFactory.GENOTYPE_FORMAT.GLF;