diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java index d844379c4..ec28cddb7 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java @@ -31,7 +31,6 @@ import java.util.List; @ReadFilters(ZeroMappingQualityReadFilter.class) public class GenotypeLikelihoodsWalker extends LocusWalker { @Argument(fullName = "variants_out", shortName = "varout", doc = "File to which variants should be written", required = true) public File VARIANTS_FILE; - @Argument(fullName = "metrics_out", shortName = "metout", doc = "File to which metrics should be written", required = false) public File METRICS_FILE = new File("/dev/stderr"); @Argument(fullName = "variant_output_format", shortName = "vf", doc = "File to which metrics should be written", required = false) public GenotypeWriterFactory.GENOTYPE_FORMAT VAR_FORMAT = GenotypeWriterFactory.GENOTYPE_FORMAT.GLF;