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GenotypeLikelihoods doesn't emit metrics, they don't make sense 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1236 348d0f76-0448-11de-a6fe-93d51630548a
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aaron 2009-07-14 17:22:28 +00:00
parent 01fc8da270
commit 7d755a4c90
1 changed files with 0 additions and 1 deletions
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java/src/org/broadinstitute/sting/playground/gatk/walkers/GenotypeLikelihoodsWalker.java
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@ -31,7 +31,6 @@ import java.util.List;
@ReadFilters(ZeroMappingQualityReadFilter.class)
public class GenotypeLikelihoodsWalker extends LocusWalker<LikelihoodWrapper, GenotypeWriter> {
@Argument(fullName = "variants_out", shortName = "varout", doc = "File to which variants should be written", required = true) public File VARIANTS_FILE;
@Argument(fullName = "metrics_out", shortName = "metout", doc = "File to which metrics should be written", required = false) public File METRICS_FILE = new File("/dev/stderr");
@Argument(fullName = "variant_output_format", shortName = "vf", doc = "File to which metrics should be written", required = false) public GenotypeWriterFactory.GENOTYPE_FORMAT VAR_FORMAT = GenotypeWriterFactory.GENOTYPE_FORMAT.GLF;