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Fixed import. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5780 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2011-05-09 18:07:40 +00:00
parent 0861451726
commit 7d21350a17
1 changed files with 7 additions and 7 deletions
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14
java/test/org/broadinstitute/sting/utils/broad/PicardPipelineUnitTest.java
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@ -1,6 +1,6 @@
package org.broadinstitute.sting.utils.broad;
import junit.framework.Assert;
import org.testng.Assert;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.FilenameUtils;
import org.broadinstitute.sting.BaseTest;
@ -37,15 +37,15 @@ public class PicardPipelineUnitTest {
private void validatePipeline(Pipeline pipeline, String name) {
Assert.assertEquals(pipeline.getProject().getName(), name);
Assert.assertTrue("reference not found", pipeline.getProject().getReferenceFile().exists());
Assert.assertTrue("intervals not found", pipeline.getProject().getIntervalList().exists());
Assert.assertTrue("refseq not found", pipeline.getProject().getRefseqTable().exists());
Assert.assertTrue("genotype dbsnp not found", pipeline.getProject().getGenotypeDbsnp().exists());
Assert.assertTrue("eval dbsnp not found", pipeline.getProject().getEvalDbsnp().exists());
Assert.assertTrue(pipeline.getProject().getReferenceFile().exists(), "reference not found");
Assert.assertTrue(pipeline.getProject().getIntervalList().exists(), "intervals not found");
Assert.assertTrue(pipeline.getProject().getRefseqTable().exists(), "refseq not found");
Assert.assertTrue(pipeline.getProject().getGenotypeDbsnp().exists(), "genotype dbsnp not found");
Assert.assertTrue(pipeline.getProject().getEvalDbsnp().exists(), "eval dbsnp not found");
Assert.assertEquals(pipeline.getSamples().size(), 1);
for (PipelineSample sample: pipeline.getSamples()) {
Assert.assertEquals(sample.getId(), PROJECT + "_" + SAMPLE);
Assert.assertTrue("bam not found", sample.getBamFiles().get(PicardPipeline.PICARD_BAM_TYPE).exists());
Assert.assertTrue(sample.getBamFiles().get(PicardPipeline.PICARD_BAM_TYPE).exists(), "bam not found");
Assert.assertEquals(sample.getTags().get(PicardPipeline.PROJECT_TAG), PROJECT);
Assert.assertEquals(sample.getTags().get(PicardPipeline.SAMPLE_TAG), SAMPLE);
}