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Removing zero no-calls restriction in AC stats 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3314 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
rpoplin 2010-05-06 18:55:07 +00:00
parent 0e58fb7cc0
commit 7cecec7d00
1 changed files with 1 additions and 2 deletions
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3
java/src/org/broadinstitute/sting/gatk/walkers/varianteval/SimpleMetricsByAC.java
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@ -143,8 +143,7 @@ public class SimpleMetricsByAC extends VariantEvaluator {
if (eval != null && if (eval != null &&
eval.isSNP() && eval.isSNP() &&
eval.hasGenotypes() && eval.hasGenotypes()) {
eval.getNoCallCount() == 0 ) {
if ( metrics == null ) if ( metrics == null )
metrics = new MetricsByAc(2 * eval.getNSamples()); metrics = new MetricsByAc(2 * eval.getNSamples());
metrics.incrValue(eval); metrics.incrValue(eval);