diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/SimpleMetricsByAC.java b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/SimpleMetricsByAC.java index 490268c1d..15acb7399 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/SimpleMetricsByAC.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/SimpleMetricsByAC.java @@ -143,8 +143,7 @@ public class SimpleMetricsByAC extends VariantEvaluator { if (eval != null && eval.isSNP() && - eval.hasGenotypes() && - eval.getNoCallCount() == 0 ) { + eval.hasGenotypes()) { if ( metrics == null ) metrics = new MetricsByAc(2 * eval.getNSamples()); metrics.incrValue(eval);