Rev picard, sam-jdk, tribble, and variant jars to version 1.90.1442

-This is mainly to get the new "0-length cigar element" check in the
 sam-jdk

settings/repository/edu.mit.broad/picard-private-parts-2872.xml

@@ -1,3 +1,3 @@
 <ivy-module version="1.0">
-    <info organisation="edu.mit.broad" module="picard-private-parts" revision="2662" status="integration" publication="" />
+    <info organisation="edu.mit.broad" module="picard-private-parts" revision="2872" status="integration" publication="" />
 </ivy-module>

settings/repository/net.sf/picard-1.84.1337.xml

@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
-    <info organisation="net.sf" module="picard" revision="1.84.1337" status="release" />
-</ivy-module>

settings/repository/net.sf/picard-1.90.1442.xml

@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+    <info organisation="net.sf" module="picard" revision="1.90.1442" status="release" />
+</ivy-module>

settings/repository/net.sf/sam-1.84.1337.xml

@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
-    <info organisation="net.sf" module="sam" revision="1.84.1337" status="release" />
-</ivy-module>

settings/repository/net.sf/sam-1.90.1442.xml

@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+    <info organisation="net.sf" module="sam" revision="1.90.1442" status="release" />
+</ivy-module>

settings/repository/org.broad/tribble-1.90.1442.xml

@@ -1,3 +1,3 @@
 <ivy-module version="1.0">
-    <info organisation="org.broad" module="tribble" revision="1.84.1337" status="integration" />
+    <info organisation="org.broad" module="tribble" revision="1.90.1442" status="integration" />
 </ivy-module>

settings/repository/org.broadinstitute/variant-1.90.1442.xml

@@ -1,3 +1,3 @@
 <ivy-module version="1.0">
-    <info organisation="org.broadinstitute" module="variant" revision="1.88.1401" status="integration" />
+    <info organisation="org.broadinstitute" module="variant" revision="1.90.1442" status="integration" />
 </ivy-module>