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Merged bug fix from Stable into Unstable

This commit is contained in:
Mauricio Carneiro 2011-09-23 19:00:43 -04:00
parent 1f5ed1fbba fbe3c1e0b3
commit 7cac75ae1d
1 changed files with 2 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/utils/clipreads/ClippingRepresentation.java
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@ -21,6 +21,8 @@ public enum ClippingRepresentation {
SOFTCLIP_BASES, SOFTCLIP_BASES,
/** /**
* WARNING: THIS OPTION IS STILL UNDER DEVELOPMENT AND IS NOT SUPPORTED.
*
* Change the read's cigar string to hard clip (H, see sam-spec) away the bases. * Change the read's cigar string to hard clip (H, see sam-spec) away the bases.
* Hard clipping, unlike soft clipping, actually removes bases from the read, * Hard clipping, unlike soft clipping, actually removes bases from the read,
* reducing the resulting file's size but introducing an irrevesible (i.e., * reducing the resulting file's size but introducing an irrevesible (i.e.,