Merged bug fix from Stable into Unstable

2011-09-23 19:00:43 -04:00 · 2011-09-23 19:00:43 -04:00 · 7cac75ae1d
parent 1f5ed1fbba fbe3c1e0b3
commit 7cac75ae1d
1 changed files with 2 additions and 0 deletions
--- a/public/java/src/org/broadinstitute/sting/utils/clipreads/ClippingRepresentation.java
+++ b/public/java/src/org/broadinstitute/sting/utils/clipreads/ClippingRepresentation.java
@ -21,6 +21,8 @@ public enum ClippingRepresentation {
    SOFTCLIP_BASES,

    /**
+     * WARNING: THIS OPTION IS STILL UNDER DEVELOPMENT AND IS NOT SUPPORTED.
+     *
     * Change the read's cigar string to hard clip (H, see sam-spec) away the bases.
     * Hard clipping, unlike soft clipping, actually removes bases from the read,
     * reducing the resulting file's size but introducing an irrevesible (i.e.,